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NGS SOLID TUMOR BIOINFORMATICS - NGSB1
NGSB1
Analytes/procedures in bold type are regulated for proficiency testing by the Centers for Medicare & Medicaid Services (CMS).
Analyte/Procedure
Challenges per Shipment
Number of Activities
Illumina TruSeq Amplicon Cancer Panel
1
Two online activities per year
Illumina TruSight Tumor 15 Panel
1
Illumina TruSight Tumor 170 Panel
1
Illumina TruSight Oncology 500 Panel
1
Thermo Fisher Ion AmpliSeq Cancer Hotspot Panel v2
1
Thermo Fisher Oncomine Comprehensive Assay v3
1
Thermo Fisher Oncomine Focus Cancer Panel
1
Additional Information
This in silico bioinformatics program is designed to complement and augment somatic variant wet bench NGS proficiency testing programs by testing a greater diversity of variants at a greater range of variant allele fractions.
This program includes variants present with a variant allele fraction (VAF) potentially as low as 5%.
For platform agnostic solid tumor bioinformatic proficiency testing challenges, refer to the NGSB4 program
Program Information
Sequencing files containing somatic variants to be downloaded and incorporated into your laboratory bioinformatics pipeline for analysis and reporting; file sizes range from 100MB to 1GB
The BAM and/or FASTQ files are platform‑specific and cannot be used with other instruments/software.
Your CAP shipping contact will be notified via email when the activity is available
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